STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI98945.11H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase. (276 aa)    
Predicted Functional Partners:
AKJ01715.1
Type IV fimbrial biogenesis protein PilY1.
  
     0.597
AKJ07698.1
Hypothetical protein.
  
     0.597
AKI98944.1
Transcriptional regulator, TetR family.
       0.594
AKI98943.1
Hypothetical protein.
       0.568
AKJ05086.1
Malonyl CoA-acyl carrier protein transacylase.
 
 
 0.538
AKJ02424.1
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.535
AKJ02806.1
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.535
AKJ02809.1
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.535
AKJ03998.1
DnaJ domain protein.
  
     0.535
AKI99960.1
Putative fatty acid desaturase.
  
     0.511
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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