STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI98959.1Hypothetical protein. (386 aa)    
Predicted Functional Partners:
AKI98958.1
Putative inner membrane protein.
 
     0.714
AKJ07865.1
Endonuclease/exonuclease/phosphatase family protein.
  
     0.561
AKI99904.1
Putative outer membrane protein.
  
     0.531
AKI98960.1
Hypothetical protein.
       0.522
AKJ07770.1
Hypothetical protein.
  
     0.510
AKI99757.1
Pyridoxamine 5'-phosphate oxidase.
  
     0.500
AKJ07948.1
Putative lipoprotein.
 
     0.474
AKI98957.1
Hypothetical protein.
       0.425
AKJ06148.1
Putative lipoprotein.
 
     0.421
AKJ03441.1
DNA topoisomerase IB.
  
     0.403
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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