Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKI98965.1Tryptophan synthase alpha chain. (745 aa)    
Predicted Functional Partners:
AKJ02410.1
TPR domain protein, putative component of TonB system.
  
     0.774
AKJ07626.1
Tryptophan synthase alpha chain.
  
     0.772
AKJ07382.1
Exonuclease SbcC.
  
     0.771
AKJ00779.1
Cell division protein FtsK.
  
     0.770
AKJ02411.1
Sporulation domain protein.
  
     0.770
AKJ00731.1
FrgA.
  
     0.769
AKJ04428.1
Hypothetical protein.
  
     0.768
AKJ02914.1
Hypothetical protein.
  
     0.767
AKI99038.1
Fatty acid desaturase family protein.
  
     0.762
AKI99034.1
Fatty acid desaturase family protein.
  
     0.760
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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