STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI98981.1Branched-chain amino acid ABC transporter, amino acid-binding protein. (1264 aa)    
Predicted Functional Partners:
AKJ00622.1
Hypothetical protein.
  
     0.766
AKJ04463.1
Cell surface protein.
 
     0.764
AKJ00624.1
Cell surface protein.
  
     0.754
AKJ00625.1
Hypothetical protein.
  
     0.754
AKJ08274.1
Cell surface protein.
  
     0.752
AKJ00626.1
Cell surface protein.
  
     0.716
AKJ06025.1
RTX toxin.
 
    0.588
AKJ04986.1
Hypothetical protein.
  
     0.495
AKJ04985.1
HYR domain protein.
  
     0.481
AKJ00009.1
Hypothetical protein.
   
 
 0.466
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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