Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKI98981.1Branched-chain amino acid ABC transporter, amino acid-binding protein. (1264 aa)    
Predicted Functional Partners:
AKJ00622.1
Hypothetical protein.
  
     0.766
AKJ04463.1
Cell surface protein.
 
     0.764
AKJ00624.1
Cell surface protein.
  
     0.754
AKJ00625.1
Hypothetical protein.
  
     0.754
AKJ08274.1
Cell surface protein.
  
     0.752
AKJ00626.1
Cell surface protein.
  
     0.716
AKJ06025.1
RTX toxin.
 
    0.613
bamD
Competence protein ComL precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.500
AKJ04986.1
Hypothetical protein.
  
     0.495
AKJ04985.1
HYR domain protein.
  
     0.481
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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