STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI98993.1Putative DNA-binding regulatory protein; Belongs to the sigma-70 factor family. ECF subfamily. (304 aa)    
Predicted Functional Partners:
AKJ02425.1
Hypothetical protein.
  
     0.749
AKJ01264.1
Hypothetical protein.
  
     0.721
AKJ03145.1
Cellulose-binding domain protein.
  
     0.718
AKJ07307.1
Hypothetical protein.
  
 
   0.712
AKJ03146.1
Hypothetical protein.
  
     0.707
AKI99277.1
Hypothetical protein.
  
     0.701
AKJ06403.1
Membrane protein.
  
     0.676
AKJ07688.1
Hypothetical protein.
  
     0.669
AKJ04985.1
HYR domain protein.
  
 
   0.666
AKJ07753.1
Putative lipoprotein.
  
     0.662
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.