Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI99003.1Cell division protein FtsH; Belongs to the AAA ATPase family. (449 aa)    
Predicted Functional Partners:
AKI99001.1
Hypothetical protein.
 
     0.921
AKI99002.1
Hypothetical protein.
       0.780
AKJ04143.1
Molybdenum transport ATP-binding protein ModC.
  
     0.657
AKJ04123.1
ABC transporter ATP-binding protein.
  
   0.638
AKJ07778.1
ABC transporter, ATP-binding protein.
  
   0.618
AKI99850.1
DNA topoisomerase III.
  
 0.617
AKJ01996.1
ABC transporter, ATP-binding protein.
  
   0.609
AKJ02423.1
Lipid A export ATP-binding/permease protein MsbA.
 
 
 0.606
AKJ07144.1
GTP cyclohydrolase II.
 
 
 
 0.605
AKJ00657.1
Lipid A export ATP-binding/permease protein MsbA.
 
 
 0.597
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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