Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AKI99009.1Outer membrane vitamin B12 receptor BtuB. (738 aa)    
Predicted Functional Partners:
AKI99008.1
Hypothetical protein.
 
   
 0.834
AKI99010.1
Hypothetical protein.
       0.773
AKJ08275.1
TonB-dependent receptor.
  
  
 0.756
AKJ02759.1
TonB-dependent hemin, ferrichrome receptor.
  
  
 0.617
AKJ00122.1
TonB-dependent receptor.
  
  
 0.611
AKJ06332.1
TonB family protein.
 
 
 0.584
AKJ06026.1
Trypsin domain protein.
  
     0.568
AKJ07519.1
Ferric siderophore transport system, periplasmic binding protein TonB.
 
 
 0.565
AKJ03212.1
TonB family protein.
 
 
 0.562
AKI98750.1
Trypsin domain protein.
  
     0.545
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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