STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI99009.1Outer membrane vitamin B12 receptor BtuB. (738 aa)    
Predicted Functional Partners:
AKI99008.1
Hypothetical protein.
 
   
 0.835
AKJ08275.1
TonB-dependent receptor.
  
  
 0.789
AKI99010.1
Hypothetical protein.
       0.773
AKJ06332.1
TonB family protein.
 
 
 0.701
AKJ03212.1
TonB family protein.
 
 
 0.686
AKJ02759.1
TonB-dependent hemin, ferrichrome receptor.
  
  
 0.670
AKJ08151.1
TonB family protein.
  
 
 0.639
AKJ00122.1
TonB-dependent receptor.
  
  
 0.602
AKJ07519.1
Ferric siderophore transport system, periplasmic binding protein TonB.
 
 
 0.579
AKJ06026.1
Trypsin domain protein.
  
     0.568
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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