Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI99063.1Hypothetical protein. (388 aa)    
Predicted Functional Partners:
AKJ05971.1
Peptidase, M19 family.
  
     0.631
AKI99062.1
Aminoglycoside phosphotransferase.
 
     0.572
AKJ03448.1
Sensor histidine kinase.
   
  
 0.485
AKI99967.1
Hypothetical protein.
  
     0.483
AKJ03613.1
Periplasmic binding protein-related protein.
   
  
 0.481
AKJ07040.1
Phosphonate ABC transporter phosphate-binding periplasmic component.
   
  
 0.481
AKI99106.1
Hypothetical protein.
 
  
 0.447
AKJ04622.1
Transcriptional regulator, TetR family.
  
     0.429
AKJ03811.1
Serine protease, subtilase family.
  
     0.421
AKI99064.1
Hypothetical protein.
       0.420
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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