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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKI99106.1Hypothetical protein. (707 aa)    
Predicted Functional Partners:
AKJ03602.1
Phosphodiesterase/alkaline phosphatase D-like protein.
  
  
  0.941
AKJ06167.1
Hypothetical protein.
  
  
  0.913
AKJ05095.1
GTP cyclohydrolase I.
    
 0.912
AKJ00365.1
Phosphodiesterase/alkaline phosphatase D.
  
  
  0.911
AKJ03862.1
6-carboxytetrahydropterin synthase.
     
  0.900
AKJ01923.1
3-phytase precursor.
 
   
 0.583
AKI99107.1
Hypothetical protein.
       0.572
AKJ00474.1
Hypothetical protein.
 
  
 0.558
AKI99498.1
Glycerophosphoryl diester phosphodiesterase.
 
  
 0.519
AKI99063.1
Hypothetical protein.
 
  
 0.447
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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