Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
AKI99226.1Phytoene dehydrogenase. (430 aa)    
Predicted Functional Partners:
AKJ00241.1
Phytoene synthase.
 
  
 0.778
AKI99227.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.773
AKJ08109.1
Phytoene desaturase.
  
     0.723
AKI98907.1
Phytoene synthase.
 
  
 0.593
AKI99225.1
Biotin synthesis protein BioH.
  
    0.529
AKJ00244.1
Hydroxyneurosporene synthase.
 
  
 0.521
AKJ00951.1
Ser/Thr and Tyr protein phosphatase.
  
  
 0.504
AKJ07985.1
Glutamate synthase [NADPH] large chain.
  
     0.445
AKJ02201.1
Hypothetical protein.
  
     0.401
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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