STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI99246.1Tetratricopeptide repeat protein. (958 aa)    
Predicted Functional Partners:
AKI99245.1
RNA polymerase sigma-54 factor RpoN; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.803
AKJ01518.1
Phage lysin, 1,4-beta-N-acetylmuramidase.
  
     0.775
AKJ03788.1
Acetyltransferase, GNAT family.
  
     0.773
AKI99451.1
Apolipoprotein N-acyltransferase.
  
     0.767
AKI99248.1
Endonuclease/exonuclease/phosphatase family protein.
  
     0.759
AKJ05239.1
SAM-dependent methyltransferase.
  
     0.759
AKJ02355.1
Histidine kinase.
  
     0.753
AKJ05424.1
Hypothetical protein.
  
    0.747
AKJ04809.1
Milk-clotting protease.
  
     0.745
AKJ06443.1
Inorganic pyrophosphatase.
  
     0.741
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.