Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI99272.1Hypothetical protein. (299 aa)    
Predicted Functional Partners:
AKI99271.1
Hypothetical protein.
       0.776
AKI99273.1
Hypothetical protein.
       0.773
AKJ02225.1
Radical SAM domain heme biosynthesis protein.
 
  
 0.715
AKJ02292.1
Radical SAM domain heme biosynthesis protein.
  
  
 0.653
AKJ01479.1
Hypothetical protein.
 
  
 0.606
AKI98937.1
Hypothetical protein.
 
     0.573
AKI99274.1
Hypothetical protein.
       0.540
AKJ04549.1
Ca ion P-type ATPase.
   
    0.502
AKJ08349.1
Lead, cadmium, zinc and mercury transporting ATPase.
   
    0.502
AKJ03628.1
Membrane protein.
  
  
 0.499
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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