Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKI99309.1VpsC protein. (410 aa)    
Predicted Functional Partners:
AKI99307.1
Putative ABC transporter permease protein.
 
 0.990
AKI99308.1
Methionine ABC transporter ATP-binding protein.
 
 0.987
AKJ03733.1
ABC-type transport system involved in resistance to organic solvents, auxiliary component.
  
 0.961
AKJ03706.1
Mammalian cell entry related domain protein.
  
  
  0.952
AKJ07584.1
ABC-type transport system involved in resistance to organic solvents, auxiliary component.
 
 0.947
AKJ03703.1
ABC amino acid transporter, inner membrane subunit.
 
 0.945
AKJ04124.1
ABC transporter permease protein.
 
 0.945
AKJ04134.1
Putative ABC transporter, permease component YrbE.
 
 0.943
AKJ03704.1
Methionine ABC transporter ATP-binding protein.
 
 0.936
AKJ04136.1
Methionine ABC transporter ATP-binding protein.
 
 0.935
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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