Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
AKI99312.1Transcriptional regulator, AraC family. (310 aa)    
Predicted Functional Partners:
AKI99311.1
Hypothetical protein.
       0.741
AKI99313.1
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.694
AKI98442.1
Transcriptional regulator, AraC family protein.
  
     0.567
AKJ03603.1
Transcriptional regulator, AraC family protein.
  
     0.560
AKJ07008.1
UDP-galactose-lipid carrier transferase.
   
    0.479
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.417
AKJ04629.1
Transcriptional regulator.
 
   0.414
AKJ05362.1
Transcriptional regulator, AraC family.
  
     0.405
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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