STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI99330.1Lipoprotein, putative. (330 aa)    
Predicted Functional Partners:
AKJ06010.1
Nicel/Cobalt-specific TonB-dependent outer membrane receptor.
  
  
 0.610
AKJ04996.1
Outer membrane receptor protein, mostly Fe transport.
  
  
 0.601
AKI99331.1
Serine--glyoxylate aminotransferase.
       0.515
AKI99332.1
Putative lipoprotein.
       0.462
AKJ03212.1
TonB family protein.
  
  
 0.432
AKJ06332.1
TonB family protein.
  
  
 0.432
AKJ08151.1
TonB family protein.
  
  
 0.432
AKJ07870.1
AttH component of AttEFGH ABC transport system.
  
     0.409
AKI99203.1
Putative asmA protein precursor.
  
     0.401
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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