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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKI99360.1Biopolymer transport protein ExbD/TolR. (138 aa)    
Predicted Functional Partners:
AKI99361.1
MotA/TolQ/ExbB proton channel family protein.
 
 
 0.977
AKJ06617.1
MotA/TolQ/ExbB proton channel family protein.
 
 
 0.916
AKI99362.1
Ferric siderophore transport system, periplasmic binding protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.909
AKJ01277.1
MotA/TolQ/ExbB proton channel family protein.
 
 
 0.898
AKJ07517.1
MotA/TolQ/ExbB proton channel family protein.
 
 
 0.895
AKJ02666.1
MotA/TolQ/ExbB proton channel family protein.
 
 
 0.884
AKI99359.1
Biopolymer transport protein ExbD/TolR.
 
    
0.826
AKJ07964.1
Ferric siderophore transport system, biopolymer transport protein ExbB.
 
 
 0.772
AKJ08425.1
Ferric siderophore transport system, periplasmic binding protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.768
tolB
tolB protein precursor protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.766
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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