Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKI99376.1Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase. (753 aa)    
Predicted Functional Partners:
AKI99377.1
PPO candidate 1.
 
   
 0.845
AKI98591.1
Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family.
  
 
 0.689
AKJ01568.1
Thioredoxin family protein.
  
 
 0.689
AKJ03017.1
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase.
  
 
 0.689
AKJ06211.1
Thioredoxin family protein.
  
 
 0.689
rsfS
Iojap protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
    0.629
recX
Regulatory protein recX; Modulates RecA activity; Belongs to the RecX family.
 
   
 0.565
AKI98454.1
Periplasmic thiol:disulfide interchange protein DsbA.
  
 
 0.535
AKJ01953.1
Periplasmic thiol:disulfide interchange protein DsbA.
  
 
 0.535
AKJ02278.1
Periplasmic thiol:disulfide interchange protein DsbA.
  
 
 0.535
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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