STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI99385.1Response regulator of zinc sigma-54-dependent two-component system. (467 aa)    
Predicted Functional Partners:
AKI99386.1
Serine/threonine protein kinase.
   
   0.801
AKJ00529.1
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.783
AKJ05823.1
Flagellar motor switch protein FliM.
  
 
 0.609
AKI99384.1
Hypothetical protein.
       0.511
AKI99383.1
BNR repeat domain protein.
   
  0.496
AKJ06427.1
Type III secretion system apparatus protein YscQ/HrcQ.
  
 
 0.485
AKJ07258.1
Glutamate synthase [NADPH] large chain.
    
 
 0.476
AKJ05829.1
Type III secretion bridge between inner and outermembrane lipoprotein.
  
  
 0.469
AKJ06429.1
Type III secretion bridge between inner and outermembrane lipoprotein.
  
  
 0.469
AKJ05717.1
General secretion pathway protein D.
  
  
 0.466
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.