Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKI99404.1Biosynthesis of stilbenes, flavonoids. (483 aa)    
Predicted Functional Partners:
AKI99403.1
Hypothetical protein.
       0.538
AKI99402.1
FAD dependent oxidoreductase.
       0.509
AKJ05823.1
Flagellar motor switch protein FliM.
   
 
 0.462
AKJ07031.1
Flagellar hook-length control protein FliK.
   
  
 0.458
AKJ02424.1
Malonyl CoA-acyl carrier protein transacylase.
  
  
 0.439
AKJ02806.1
Malonyl CoA-acyl carrier protein transacylase.
  
  
 0.439
AKJ02809.1
Malonyl CoA-acyl carrier protein transacylase.
  
  
 0.439
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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