Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI99411.1Oar protein. (1042 aa)    
Predicted Functional Partners:
AKJ02786.1
Isochorismatase.
  
  
 0.587
AKJ03555.1
Outer membrane vitamin B12 receptor BtuB.
 
   
 0.566
AKI99410.1
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase.
       0.553
AKI99357.1
Hypothetical protein.
 
     0.544
AKI99358.1
TonB-dependent receptor.
  
  
 0.529
AKJ05512.1
Peptidase M28.
  
     0.528
AKJ07506.1
SusC, outer membrane protein.
  
  
 0.518
AKJ00603.1
Aminopeptidase.
  
     0.505
AKJ04743.1
Hypothetical protein.
  
     0.468
AKJ03212.1
TonB family protein.
 
 
 0.447
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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