Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKI99417.1cAMP-binding protein. (226 aa)    
Predicted Functional Partners:
AKJ00201.1
PKA regulatory subunit-like protein.
  
     0.743
AKJ05683.1
Hypothetical protein.
  
     0.735
AKJ04840.1
cAMP-binding protein.
  
     0.718
AKJ05950.1
Global nitrogen regulatory protein, CRP family of transcriptional regulators.
  
   
 0.592
AKJ04853.1
Adenylate cyclase.
 
 
 0.555
AKJ04883.1
Response regulator.
  
 
 0.541
AKJ03789.1
cAMP-binding protein.
  
     0.530
AKI99909.1
Adenylate cyclase.
 
 
 0.517
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
 
 0.512
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.511
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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