Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI99420.1Serine protease. (298 aa)    
Predicted Functional Partners:
AKI99419.1
Hypothetical protein.
 
    
0.824
AKJ07199.1
HtrA protease/chaperone protein.
  
 
 
 0.781
AKJ04236.1
Serine protease precursor MucD/AlgY associated with sigma factor RpoE.
  
     0.739
AKJ04360.1
Putative protease.
  
     0.572
AKJ00612.1
Diguanylate cyclase/phosphodiesterase.
 
  
 0.533
AKJ07448.1
Hypothetical protein.
  
  
 0.496
AKJ05961.1
Putative SigmaB asociated two-component system sensor protein.
  
  
 0.485
AKI99695.1
Putative SigmaB asociated two-component system sensor protein.
  
  
 0.480
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
  
 0.478
AKI99421.1
DNA-binding response regulator, LuxR family.
     
 0.477
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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