Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKI99448.1Transcriptional regulator, ArsR family. (109 aa)    
Predicted Functional Partners:
AKI99447.1
Hypothetical protein.
 
  
 0.808
AKI98852.1
Putative glutathione S-transferase-related transmembrane protein.
 
  
 0.788
AKI99900.1
Transcriptional regulator, ArsR family.
  
     0.700
AKI99445.1
Hypothetical protein.
 
     0.678
AKI99446.1
Hypothetical protein.
       0.628
AKI99449.1
Acetyltransferase, GNAT family.
       0.543
AKJ04013.1
Arsenical pump membrane protein.
  
  
 0.480
AKI99450.1
Thioesterase family protein.
       0.403
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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