Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKI99452.1Transcriptional regulator, PadR family. (195 aa)    
Predicted Functional Partners:
AKI99451.1
Apolipoprotein N-acyltransferase.
 
     0.912
AKJ03802.1
Hypothetical protein.
  
     0.555
AKI99453.1
Hypothetical protein.
       0.532
AKI99454.1
Hypothetical protein.
       0.524
AKJ03788.1
Acetyltransferase, GNAT family.
  
     0.518
AKJ05237.1
Hypothetical protein.
  
     0.490
AKI99246.1
Tetratricopeptide repeat protein.
  
     0.479
AKJ01518.1
Phage lysin, 1,4-beta-N-acetylmuramidase.
  
     0.470
AKI98883.1
Acetyltransferase, GNAT family.
 
     0.462
AKI98730.1
LuxR family transcriptional regulator.
  
     0.422
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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