Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI99453.1Hypothetical protein. (344 aa)    
Predicted Functional Partners:
AKI99454.1
Hypothetical protein.
       0.773
AKI99600.1
Lysine-epsilon oxidase.
 
     0.581
AKJ00078.1
Lysine-epsilon oxidase.
 
     0.566
AKI99191.1
Putative secreted glycosyl hydrolase; Belongs to the peptidase S1B family.
  
     0.550
AKI99452.1
Transcriptional regulator, PadR family.
       0.532
AKI99451.1
Apolipoprotein N-acyltransferase.
       0.524
AKI99668.1
Dehydrogenase flavoprotein LodB.
 
     0.521
AKI99599.1
Dehydrogenase flavoprotein LodB.
 
     0.517
AKI99455.1
ATP-dependent DNA ligase.
       0.485
AKJ00079.1
Dehydrogenase flavoprotein LodB.
 
     0.473
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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