STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI99456.1ATP-dependent DNA ligase. (354 aa)    
Predicted Functional Partners:
AKI99455.1
ATP-dependent DNA ligase.
   
 0.979
ku
Ku domain protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
  
 0.901
AKJ05421.1
Exodeoxyribonuclease III.
 
    0.716
AKJ00812.1
Hypothetical protein.
  
     0.671
AKJ00942.1
ATP-dependent DNA ligase.
   
 0.569
AKJ01985.1
Exodeoxyribonuclease III.
 
    0.558
AKJ03441.1
DNA topoisomerase IB.
 
     0.544
AKI99457.1
Hypothetical protein.
       0.493
AKJ05258.1
DNA polymerase X family.
 
   
 0.480
AKJ05438.1
Hypothetical protein.
 
    0.451
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.