Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKI99503.1Mobile element protein. (58 aa)    
Predicted Functional Partners:
AKJ00865.1
Competence protein F like protein.
   
    0.579
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.564
AKJ05066.1
Hypothetical protein; Belongs to the SOS response-associated peptidase family.
   
    0.528
AKJ00157.1
Prephenate/arogenate dehydrogenase.
  
    0.510
AKJ03358.1
Prephenate/arogenate dehydrogenase.
  
    0.510
AKI99504.1
3-oxoacyl-[acyl-carrier protein] reductase.
       0.507
AKI99505.1
Hypothetical protein.
       0.507
AKJ02718.1
Teichoic acid export ATP-binding protein TagH.
   
    0.479
rpsU
SSU ribosomal protein S21p; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.413
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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