Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI99520.1Hypothetical protein. (283 aa)    
Predicted Functional Partners:
AKI99521.1
Fibro-slime domain protein.
 
     0.554
AKJ00339.1
Phenazine biosynthesis protein PhzF like protein.
 
    
 0.542
AKI99104.1
Alkaline phosphatase.
  
   
 0.531
AKJ07002.1
Hypothetical protein.
   
   0.507
AKI99519.1
Sensory box histidine kinase.
     
 0.476
AKI99466.1
Hypothetical protein.
   
 0.472
AKJ00470.1
Hypothetical protein.
   
 0.472
AKJ05974.1
Hypothetical protein.
   
 0.472
AKJ02424.1
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.411
AKJ02806.1
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.411
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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