Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI99522.1Hypothetical protein. (237 aa)    
Predicted Functional Partners:
AKI98937.1
Hypothetical protein.
 
     0.954
AKJ07418.1
Zinc finger, SWIM-type protein.
  
     0.721
AKJ02776.1
SWIM zinc finger domain protein.
  
     0.711
AKJ07419.1
Hypothetical protein.
  
     0.706
AKJ07416.1
Retron-type RNA-directed DNA polymerase.
  
     0.678
AKJ02777.1
Retron-type RNA-directed DNA polymerase.
  
     0.614
AKI99114.1
SWIM zinc finger domain protein.
  
     0.611
AKJ02078.1
Retron-type RNA-directed DNA polymerase.
  
     0.597
AKI99110.1
Retron-type RNA-directed DNA polymerase.
  
     0.588
AKJ02778.1
Retron-type RNA-directed DNA polymerase.
  
     0.547
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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