STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI99540.1Lycopene cyclase, CruA type. (484 aa)    
Predicted Functional Partners:
AKI99541.1
phi-Carotenoid synthase.
    
 0.975
AKJ00240.1
Phytoene dehydrogenase.
  
 
 0.920
AKJ08109.1
Phytoene desaturase.
  
 
 0.917
AKJ00244.1
Hydroxyneurosporene synthase.
   
 
 0.905
AKJ07119.1
Beta-carotene ketolase.
   
 
 0.901
AKJ00246.1
Geranylgeranyl-diphosphate geranylgeranyl-transferase.
     
  0.900
AKI99115.1
Hypothetical protein.
  
     0.751
AKJ01018.1
Peptidase, M19 family.
  
     0.719
AKJ08473.1
Neurosporene desaturase.
 
  
 0.719
AKJ00837.1
Peptidase, M19 family.
  
     0.709
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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