Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI99543.1Hypothetical protein. (269 aa)    
Predicted Functional Partners:
AKI99542.1
Short-chain dehydrogenase/reductase SDR.
       0.709
AKI99541.1
phi-Carotenoid synthase.
       0.503
AKI99540.1
Lycopene cyclase, CruA type.
       0.484
AKI99539.1
Ubiquinone biosynthesis monooxygenase UbiB.
       0.447
AKI99546.1
Hypothetical protein.
       0.434
AKI99544.1
Hypothetical protein.
       0.429
AKI99545.1
Hypothetical protein.
       0.429
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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