STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI99599.1Dehydrogenase flavoprotein LodB. (377 aa)    
Predicted Functional Partners:
AKI99600.1
Lysine-epsilon oxidase.
 
     0.948
AKJ00078.1
Lysine-epsilon oxidase.
 
     0.781
AKI99669.1
Lysine-epsilon oxidase.
 
     0.777
AKI99598.1
Glycoprotein gp2.
       0.773
AKI99601.1
Small molecule metabolism.
       0.757
AKJ06942.1
Electron transfer flavoprotein, beta subunit.
  
 
 0.538
AKJ03769.1
Hypothetical protein.
 
     0.521
AKJ07690.1
Putative oxidoreductase.
  
     0.519
AKI99453.1
Hypothetical protein.
 
     0.517
AKJ06941.1
Electron transfer flavoprotein, alpha subunit.
  
 
 0.513
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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