STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI99634.1CAAX amino terminal protease family protein. (321 aa)    
Predicted Functional Partners:
AKJ04451.1
Polysaccharide deacetylase domain protein.
 
     0.612
AKJ05634.1
TPR repeat protein.
  
     0.573
AKI99635.1
Hypothetical protein.
       0.543
AKI99636.1
BNR repeat domain protein.
       0.543
AKJ00586.1
AknN.
  
  
 0.507
AKJ05787.1
Hypothetical protein.
  
  
 0.507
AKJ05881.1
Hypothetical protein.
  
  
 0.507
AKJ02369.1
Membrane protein.
  
    0.483
AKJ03500.1
Hypothetical protein.
  
    0.483
AKI98888.1
Nitroreductase family protein.
  
  
 0.474
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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