STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI99668.1Dehydrogenase flavoprotein LodB. (359 aa)    
Predicted Functional Partners:
AKI99669.1
Lysine-epsilon oxidase.
 
     0.926
AKI99600.1
Lysine-epsilon oxidase.
 
     0.782
AKJ00078.1
Lysine-epsilon oxidase.
 
     0.782
AKJ03535.1
Extracellular protease precursor.
  
     0.631
AKJ04752.1
Extracellular protease precursor.
  
     0.623
AKJ06942.1
Electron transfer flavoprotein, beta subunit.
  
 
 0.538
AKI99453.1
Hypothetical protein.
 
     0.521
AKJ06941.1
Electron transfer flavoprotein, alpha subunit.
  
 
 0.513
AKI99667.1
Endonuclease/exonuclease/phosphatase.
       0.510
AKJ03769.1
Hypothetical protein.
 
     0.507
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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