Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKI99668.1Dehydrogenase flavoprotein LodB. (359 aa)    
Predicted Functional Partners:
AKI99669.1
Lysine-epsilon oxidase.
 
     0.926
AKI99600.1
Lysine-epsilon oxidase.
 
     0.781
AKJ00078.1
Lysine-epsilon oxidase.
 
     0.781
AKJ03535.1
Extracellular protease precursor.
  
     0.631
AKJ04752.1
Extracellular protease precursor.
  
     0.623
AKJ06942.1
Electron transfer flavoprotein, beta subunit.
  
 
 0.578
AKI99453.1
Hypothetical protein.
 
     0.521
AKI99667.1
Endonuclease/exonuclease/phosphatase.
       0.510
AKJ03769.1
Hypothetical protein.
 
     0.506
AKJ06941.1
Electron transfer flavoprotein, alpha subunit.
  
 
 0.490
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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