STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI99794.1Peptidyl-prolyl cis-trans isomerase PpiD. (172 aa)    
Predicted Functional Partners:
AKI99795.1
Peptidyl-prolyl cis-trans isomerase PpiD.
      0.873
AKI99793.1
Peptidyl-prolyl cis-trans isomerase PpiD.
  
  
 0.798
AKI99792.1
Survival protein SurA precursor.
  
  
 0.700
AKI99791.1
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
  
  
 0.678
AKI99796.1
Polyhydroxyalkanoic acid synthase.
       0.580
AKI99276.1
Hypothetical protein.
  
     0.571
AKJ04462.1
Ser/Thr and Tyr protein phosphatase.
  
     0.536
AKJ02404.1
TPR domain protein, putative component of TonB system.
  
    0.524
AKJ05841.1
Hypothetical protein.
  
   
 0.514
AKJ06640.1
Outer membrane protein assembly factor YaeT precursor.
 
 
 0.484
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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