Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKI99815.1Putative lipoprotein. (540 aa)    
Predicted Functional Partners:
AKI99138.1
Putative dye-decolorizing peroxidase.
  
  
 0.594
AKJ08461.1
Peroxidase.
  
  
 0.594
AKI99814.1
Hypothetical protein.
       0.570
AKI99008.1
Hypothetical protein.
  
    0.529
AKJ02792.1
Hypothetical protein.
  
    0.529
AKJ08426.1
Putative iron-regulated membrane protein.
  
    0.529
AKI99813.1
Hypothetical protein.
       0.498
AKI99812.1
TonB-dependent receptor.
       0.465
AKI99816.1
Two-component response regulator.
       0.432
AKI99197.1
FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
    
   0.431
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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