STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI99861.1LysM domain protein. (231 aa)    
Predicted Functional Partners:
AKJ02846.1
Flagellar motor protein.
  
     0.676
AKJ07382.1
Exonuclease SbcC.
  
     0.674
AKJ02914.1
Hypothetical protein.
  
   
 0.671
AKJ06930.1
Hypothetical protein.
  
 
 
 0.668
AKJ01243.1
Hypothetical protein.
  
     0.665
AKJ00466.1
RTX toxin.
  
     0.646
AKJ00061.1
Hypothetical protein.
 
  
 0.641
AKJ01606.1
Amino acid adenylation domain protein.
  
     0.640
AKJ04380.1
Hypothetical protein.
  
     0.639
AKI98397.1
Hypothetical protein.
  
     0.580
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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