AKI99888.1 protein (Archangium gephyra) - STRING interaction network

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Score

AKI99888.1

ABC transporter, ATP-binding protein. (559 aa)

Predicted Functional Partners:

rplW

0.711

rpsP

0.682

rplU

0.658

rpsC

0.654

rpsO

0.650

rplC

0.647

rpmD

0.644

rplT

0.643

rpsG

0.639

rpmH

0.637

Your Current Organism:

Archangium gephyra

NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKI99888.1	rplC	AA314_01515	AA314_05929	ABC transporter, ATP-binding protein.	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.647
AKI99888.1	rplT	AA314_01515	AA314_05148	ABC transporter, ATP-binding protein.	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.643
AKI99888.1	rplU	AA314_01515	AA314_02928	ABC transporter, ATP-binding protein.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.658
AKI99888.1	rplW	AA314_01515	AA314_04730	ABC transporter, ATP-binding protein.	LSU ribosomal protein L23p; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.711
AKI99888.1	rpmD	AA314_01515	AA314_04746	ABC transporter, ATP-binding protein.	LSU ribosomal protein L30p.	0.644
AKI99888.1	rpmH	AA314_01515	AA314_00455	ABC transporter, ATP-binding protein.	LSU ribosomal protein L34p; Belongs to the bacterial ribosomal protein bL34 family.	0.637
AKI99888.1	rpsC	AA314_01515	AA314_04734	ABC transporter, ATP-binding protein.	SSU ribosomal protein S3p; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.654
AKI99888.1	rpsG	AA314_01515	AA314_04724	ABC transporter, ATP-binding protein.	SSU ribosomal protein S7p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.639
AKI99888.1	rpsO	AA314_01515	AA314_07883	ABC transporter, ATP-binding protein.	SSU ribosomal protein S15p; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.650
AKI99888.1	rpsP	AA314_01515	AA314_05048	ABC transporter, ATP-binding protein.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.682
rplC	AKI99888.1	AA314_05929	AA314_01515	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ABC transporter, ATP-binding protein.	0.647
rplC	rplT	AA314_05929	AA314_05148	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.995
rplC	rplU	AA314_05929	AA314_02928	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.986
rplC	rplW	AA314_05929	AA314_04730	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L23p; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.997
rplC	rpmD	AA314_05929	AA314_04746	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L30p.	0.994
rplC	rpmH	AA314_05929	AA314_00455	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L34p; Belongs to the bacterial ribosomal protein bL34 family.	0.938
rplC	rpsC	AA314_05929	AA314_04734	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S3p; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.997
rplC	rpsG	AA314_05929	AA314_04724	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S7p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.991
rplC	rpsO	AA314_05929	AA314_07883	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S15p; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.989
rplC	rpsP	AA314_05929	AA314_05048	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.986