STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI99894.1Hemolysin-type calcium-binding region. (371 aa)    
Predicted Functional Partners:
AKJ05823.1
Flagellar motor switch protein FliM.
  
  
 0.983
AKJ05824.1
Hypothetical protein.
  
 
 0.852
AKJ05826.1
Flagellum-specific ATP synthase FliI.
  
  
 0.820
fliQ
Flagellar biosynthesis protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.
  
 
 0.818
AKJ06424.1
Flagellar biosynthesis protein FliQ.
  
 
 0.818
AKJ05831.1
RNA polymerase sigma factor for flagellar operon; Belongs to the sigma-70 factor family.
  
  
 0.816
AKJ02951.1
PAS/PAC domain protein.
  
  
 0.805
AKJ05822.1
Flagellar biosynthesis protein FliO.
  
  
 0.799
AKJ02023.1
PAS/PAC domain protein.
  
  
 0.793
AKJ02165.1
Sensory box histidine kinase.
  
  
 0.793
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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