STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI99895.1Nuclease protein. (166 aa)    
Predicted Functional Partners:
AKI99894.1
Hemolysin-type calcium-binding region.
       0.773
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.712
AKI99896.1
Hypothetical protein.
       0.618
AKI99893.1
Hypothetical protein.
       0.576
AKI99029.1
Acyltransferase family protein.
   
  
 0.465
AKJ00492.1
Exopolysaccharide production protein ExoZ.
   
  
 0.465
AKJ01063.1
Acyltransferase family protein.
   
  
 0.465
AKJ04784.1
O-antigen acetylase.
   
  
 0.465
AKJ07646.1
Acyltransferase 3.
   
  
 0.465
AKJ05826.1
Flagellum-specific ATP synthase FliI.
   
    0.463
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.