Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKI99895.1Nuclease protein. (166 aa)    
Predicted Functional Partners:
AKI99894.1
Hemolysin-type calcium-binding region.
       0.773
AKI99896.1
Hypothetical protein.
       0.618
AKI99893.1
Hypothetical protein.
       0.572
rpsD
SSU ribosomal protein S4p; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
   0.511
AKJ05826.1
Flagellum-specific ATP synthase FliI.
   
    0.483
AKJ05258.1
DNA polymerase X family.
  
   
 0.460
AKI99029.1
Acyltransferase family protein.
   
  
 0.453
AKJ00492.1
Exopolysaccharide production protein ExoZ.
   
  
 0.453
AKJ01063.1
Acyltransferase family protein.
   
  
 0.453
AKJ04784.1
O-antigen acetylase.
   
  
 0.453
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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