Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI99902.1Internalin, putative. (656 aa)    
Predicted Functional Partners:
AKI99903.1
OmpA domain protein.
   
   0.766
AKI99038.1
Fatty acid desaturase family protein.
  
     0.719
AKI99034.1
Fatty acid desaturase family protein.
  
     0.715
AKI99904.1
Putative outer membrane protein.
 
     0.666
AKJ04728.1
Putative 2-component regulator.
  
     0.653
AKJ03911.1
NHL repeat containing protein.
  
     0.644
AKJ07454.1
Beta-hexosaminidase.
  
     0.607
AKJ00021.1
Fatty acid desaturase family protein.
  
     0.544
AKJ04754.1
5-keto-2-deoxygluconokinase.
  
     0.540
AKJ05235.1
Hypothetical protein.
  
     0.533
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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