Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI99903.1OmpA domain protein. (609 aa)    
Predicted Functional Partners:
AKI99902.1
Internalin, putative.
   
   0.766
AKJ06767.1
Flagellar motor rotation protein MotB.
  
 
 0.763
AKJ04614.1
Outer membrane protein A precursor.
  
     0.722
AKJ08187.1
Flagellar motor rotation protein MotB.
  
 
 0.670
AKI99024.1
Universal stress protein.
   
    0.641
AKJ04162.1
Universal stress protein.
   
    0.641
AKJ06518.1
Universal stress protein.
   
    0.641
AKI99904.1
Putative outer membrane protein.
 
     0.622
AKJ07137.1
Vitamin K-dependent gamma-carboxylase.
  
    0.533
AKJ08330.1
Universal stress protein.
   
    0.503
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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