Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI99904.1Putative outer membrane protein. (274 aa)    
Predicted Functional Partners:
AKJ00414.1
Hypothetical protein.
  
     0.681
AKI99902.1
Internalin, putative.
 
     0.666
AKJ07109.1
Hypothetical protein.
  
     0.656
AKI99903.1
OmpA domain protein.
 
     0.622
AKJ07688.1
Hypothetical protein.
  
     0.619
AKJ08151.1
TonB family protein.
  
     0.603
AKI99821.1
TonB family protein.
  
     0.599
AKJ08302.1
Hypothetical protein.
  
     0.587
AKI99905.1
Hypothetical protein.
       0.586
AKI99038.1
Fatty acid desaturase family protein.
  
     0.584
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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