Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKI99916.1NAD-dependent protein deacetylase. (279 aa)    
Predicted Functional Partners:
AKJ00312.1
High-affnity carbon uptake protein Hat/HatR.
   
 0.785
AKI98602.1
DNA gyrase subunit A.
   
  0.756
AKI99850.1
DNA topoisomerase III.
 
 
 0.670
AKI99915.1
Beta-ketoadipate enol-lactone hydrolase.
  
    0.497
AKJ04468.1
Transcriptional regulator, LuxR family.
   
    0.481
AKJ02102.1
Putative transcriptional regulator.
  
    0.479
AKJ08021.1
Regulator of competence-specific genes.
    
   0.450
AKI99409.1
Hypothetical protein.
   
   0.438
AKJ00172.1
Deacetylase.
    
 0.433
AKJ01070.1
Deacetylase.
    
 0.433
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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