STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI99940.1Response regulator of zinc sigma-54-dependent two-component system. (466 aa)    
Predicted Functional Partners:
AKI99939.1
Sensor histidine kinase.
 
   0.834
AKJ00529.1
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.727
AKJ05823.1
Flagellar motor switch protein FliM.
  
  
 0.723
AKI99786.1
Chemotaxis protein methyltransferase CheR.
  
 
 0.523
AKJ04336.1
Flagellar sensor histidine kinase FleS.
 
 
 0.509
AKJ03303.1
Sensory box histidine kinase/response regulator.
 
 
 0.469
AKJ04331.1
Flagellar synthesis regulator FleN.
  
 
 0.456
AKJ02009.1
Signal transduction histidine kinase CheA.
  
 
0.441
AKJ05979.1
Signal transduction histidine kinase CheA.
  
 
 0.441
AKJ07081.1
Signal transduction histidine kinase CheA.
  
 
 0.441
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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