Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKI99948.1Hypothetical protein. (346 aa)    
Predicted Functional Partners:
AKJ00809.1
Hypothetical protein.
  
     0.715
AKJ06159.1
Transcriptional regulator, TetR family.
  
     0.605
AKI99950.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.596
AKI99949.1
Hypothetical protein.
       0.578
AKJ00188.1
Basic proline-rich protein.
  
     0.578
AKJ04586.1
Putative esterase.
  
     0.578
AKJ07173.1
Hypothetical protein.
  
     0.541
AKI99951.1
Transcriptional regulator, TetR family.
       0.530
AKJ02935.1
Acetyltransferase.
  
     0.529
AKJ01472.1
Hypothetical protein.
  
     0.515
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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