STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI99951.1Transcriptional regulator, TetR family. (224 aa)    
Predicted Functional Partners:
AKI99949.1
Hypothetical protein.
  
    0.705
AKI99950.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.705
AKI99952.1
Phospholipase D Active site motif domain protein.
       0.553
AKI99948.1
Hypothetical protein.
       0.530
AKJ02786.1
Isochorismatase.
  
   
 0.464
AKI99953.1
Sensory box histidine kinase/response regulator.
   
   0.453
AKJ05319.1
Transcriptional regulator, TetR family.
  
     0.420
pth
Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.414
AKJ06586.1
Hypothetical protein.
  
     0.407
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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