STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKI99959.1Transcriptional regulator, AraC family. (234 aa)    
Predicted Functional Partners:
AKI99960.1
Putative fatty acid desaturase.
 
     0.725
AKJ08357.1
Transcriptional regulator, AraC family.
  
     0.716
AKJ05362.1
Transcriptional regulator, AraC family.
  
     0.697
AKJ00419.1
Transcriptional regulator, AraC family.
 
 
 0.682
AKJ05015.1
Transcriptional regulator, AraC family.
  
     0.645
AKI99958.1
Hypothetical protein.
       0.543
AKJ04632.1
Transcriptional regulator, AraC family.
  
     0.463
AKJ02366.1
Transcriptional regulator.
 
 
 0.424
AKI99961.1
Transcriptional regulator, XRE family.
       0.417
AKI98442.1
Transcriptional regulator, AraC family protein.
  
     0.404
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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