Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AKJ00009.1Hypothetical protein. (171 aa)    
Predicted Functional Partners:
bamD
Competence protein ComL precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.747
AKJ01355.1
Hypothetical protein.
   
 
 0.689
AKJ05847.1
tolB protein precursor protein.
   
 
 0.567
AKJ06640.1
Outer membrane protein assembly factor YaeT precursor.
   
 
 0.560
AKJ00848.1
Hypothetical protein.
   
 
 0.523
AKJ02192.1
Hypothetical protein.
   
 
 0.523
AKJ02558.1
Outer membrane protein assembly factor YaeT precursor.
   
 
 0.523
bamA
Outer membrane protein assembly factor YaeT precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.523
AKJ06210.1
Hypothetical protein.
   
 
 0.523
AKJ07109.1
Hypothetical protein.
   
 
 0.523
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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