Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKJ00036.1Hypothetical protein. (382 aa)    
Predicted Functional Partners:
AKJ00035.1
Hypothetical protein.
 
  
 0.906
AKJ00034.1
Response regulator.
  
    0.845
AKJ03257.1
Adventurous gliding motility protein K.
  
     0.742
AKI99188.1
Acetyltransferase, GNAT family.
  
     0.700
AKJ03860.1
Dihydroneopterin aldolase.
  
     0.691
AKJ04389.1
Acetyltransferase, GNAT family.
  
     0.667
AKJ04220.1
Hypothetical protein.
 
    0.656
AKJ05991.1
Hypothetical protein.
  
     0.652
AKI99246.1
Tetratricopeptide repeat protein.
  
     0.640
AKJ00037.1
Hypothetical protein.
       0.640
Your Current Organism:
Archangium gephyra
NCBI taxonomy Id: 48
Other names: A. gephyra, ATCC 25201, Chondrococcus cerebriformis, Chondromyces serpens, DSM 2261, Myxococcus cerebriformis
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